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DII

DII.Rd

Calculate the DII dietary index, Dietary Inflammation Index, using given the serving sizes of foods and nutrients consumed per 1 day. Not all parameters are needed. You can give as many parameters as you have, and the results will only include scores for the parameters you included.

Usage

DII(
  SERV_DATA,
  RESPONDENTID,
  REPEATNUM = 1,
  ALCOHOL_DII = NULL,
  VITB12_DII = NULL,
  VITB6_DII = NULL,
  BCAROTENE_DII = NULL,
  CAFFEINE_DII = NULL,
  CARB_DII = NULL,
  CHOLES_DII = NULL,
  KCAL_DII = NULL,
  EUGENOL_DII = NULL,
  TOTALFAT_DII = NULL,
  FIBER_DII = NULL,
  FOLICACID_DII = NULL,
  GARLIC_DII = NULL,
  GINGER_DII = NULL,
  IRON_DII = NULL,
  MG_DII = NULL,
  MUFA_DII = NULL,
  NIACIN_DII = NULL,
  N3FAT_DII = NULL,
  N6FAT_DII = NULL,
  ONION_DII = NULL,
  PROTEIN_DII = NULL,
  PUFA_DII = NULL,
  RIBOFLAVIN_DII = NULL,
  SAFFRON_DII = NULL,
  SATFAT_DII = NULL,
  SE_DII = NULL,
  THIAMIN_DII = NULL,
  TRANSFAT_DII = NULL,
  TURMERIC_DII = NULL,
  VITA_DII = NULL,
  VITC_DII = NULL,
  VITD_DII = NULL,
  VITE_DII = NULL,
  ZN_DII = NULL,
  TEA_DII = NULL,
  FLA3OL_DII = NULL,
  FLAVONES_DII = NULL,
  FLAVONOLS_DII = NULL,
  FLAVONONES_DII = NULL,
  ANTHOC_DII = NULL,
  ISOFLAVONES_DII = NULL,
  PEPPER_DII = NULL,
  THYME_DII = NULL,
  ROSEMARY_DII = NULL
)

Arguments

SERV_DATA

The raw data file that includes all the serving sizes of foods and nutrients

RESPONDENTID

The unique participant ID for each participant

REPEATNUM

The number of repeated record with each participant, 1st collection=1, 2nd collection =2, etc. If no repeat number is given, the default is 1

ALCOHOL_DII

Unit=g

VITB12_DII

Unit=μg

VITB6_DII

Unit=mg

BCAROTENE_DII

Unit=μg

CAFFEINE_DII

Unit=g

CARB_DII

Unit=g

CHOLES_DII

Unit=mg

KCAL_DII

Unit=KCAL_DII

EUGENOL_DII

Unit=mg

TOTALFAT_DII

Unit=g

FIBER_DII

Unit=g

FOLICACID_DII

Unit=μg

GARLIC_DII

Unit=g

GINGER_DII

Unit=g

IRON_DII

Unit=mg

MG_DII

Unit=mg

MUFA_DII

Unit=g

NIACIN_DII

Unit=mg

N3FAT_DII

Unit=g

N6FAT_DII

Unit=g

ONION_DII

Unit=g

PROTEIN_DII

Unit=g

PUFA_DII

Unit=g

RIBOFLAVIN_DII

Unit=mg

SAFFRON_DII

Unit=g

SATFAT_DII

Unit=g

SE_DII

Unit=μg

THIAMIN_DII

Unit=mg

TRANSFAT_DII

Unit=g

TURMERIC_DII

Unit=mg

VITA_DII

Unit=RE

VITC_DII

Unit=mg

VITD_DII

Unit=μg

VITE_DII

Unit=mg

ZN_DII

Unit=mg

TEA_DII

Unit=g

FLA3OL_DII

Unit=mg

FLAVONES_DII

Unit=mg

FLAVONOLS_DII

Unit=mg

FLAVONONES_DII

Unit=mg

ANTHOC_DII

Unit=mg

ISOFLAVONES_DII

Unit=mg

PEPPER_DII

Unit=g

THYME_DII

Unit=mg

ROSEMARY_DII

Unit=mg

Value

The DII index/score

Examples

data("DHQ3_exp")
DII(DHQ3_exp, DHQ3_exp$`Respondent ID`, 1, DHQ3_exp$`Alcohol (g)`, DHQ3_exp$`Vitamin B12 (mcg)`, DHQ3_exp$`Vitamin B6 (mg)`)
#> [1] "It is normal to see warnings if you do not provide all arguments using DII. The algorithm will only count the arguments you enter to calculate the DII. All warnings are about the first column you don't use. For example, if you only entered alcohol, vitamin b12, and vitamin b6, all warnings would remind you that bcarotene is not found."
#> Warning: Unknown or uninitialised column: `BCAROTENE_DII`.
#> Warning: Unknown or uninitialised column: `BCAROTENE_DII`.
#> Warning: Unknown or uninitialised column: `BCAROTENE_DII`.
#> Warning: Unknown or uninitialised column: `BCAROTENE_DII`.
#> Warning: Unknown or uninitialised column: `BCAROTENE_DII`.
#> Warning: Unknown or uninitialised column: `BCAROTENE_DII`.
#> Warning: Unknown or uninitialised column: `BCAROTENE_DII`.
#> Warning: Unknown or uninitialised column: `BCAROTENE_DII`.
#> Warning: Unknown or uninitialised column: `BCAROTENE_DII`.
#> Warning: Unknown or uninitialised column: `BCAROTENE_DII`.
#> Warning: Unknown or uninitialised column: `BCAROTENE_DII`.
#> Warning: Unknown or uninitialised column: `BCAROTENE_DII`.
#> Warning: Unknown or uninitialised column: `BCAROTENE_DII`.
#> Warning: Unknown or uninitialised column: `BCAROTENE_DII`.
#> Warning: Unknown or uninitialised column: `BCAROTENE_DII`.
#> Warning: Unknown or uninitialised column: `BCAROTENE_DII`.
#> Warning: Unknown or uninitialised column: `BCAROTENE_DII`.
#> Warning: Unknown or uninitialised column: `BCAROTENE_DII`.
#> Warning: Unknown or uninitialised column: `BCAROTENE_DII`.
#> Warning: Unknown or uninitialised column: `BCAROTENE_DII`.
#> Warning: Unknown or uninitialised column: `BCAROTENE_DII`.
#> Warning: Unknown or uninitialised column: `BCAROTENE_DII`.
#> Warning: Unknown or uninitialised column: `BCAROTENE_DII`.
#> # A tibble: 23 × 49
#> # Groups:   RESPONDENTID [23]
#>    RESPONDENTID DII_ALL DII_NOETOH REPEATNUM ALCOHOL_DII VITB12_DII VITB6_DII
#>           <dbl>   <dbl>      <dbl>     <dbl>       <dbl>      <dbl>     <dbl>
#>  1            1  0.0479    -0.230          1       0.278    -0.0232   -0.207 
#>  2            2  0.208     -0.0697         1       0.278    -0.0855    0.0157
#>  3            3 -0.115     -0.384          1       0.270    -0.0361   -0.348 
#>  4            4  0.0194    -0.258          1       0.278    -0.0486   -0.210 
#>  5            5  0.277      0.0425         1       0.234    -0.0760    0.119 
#>  6            6  0.448      0.170          1       0.278    -0.0949    0.265 
#>  7            7  0.348      0.0699         1       0.278    -0.0869    0.157 
#>  8            8 -0.0124    -0.286          1       0.274    -0.0574   -0.229 
#>  9            9  0.101     -0.0525         1       0.153    -0.0682    0.0157
#> 10           10  0.170     -0.108          1       0.277    -0.0297   -0.0778
#> # ℹ 13 more rows
#> # ℹ 42 more variables: BCAROTENE_DII <dbl>, CAFFEINE_DII <int>, CARB_DII <int>,
#> #   CHOLES_DII <int>, KCAL_DII <int>, EUGENOL_DII <int>, TOTALFAT_DII <int>,
#> #   FIBER_DII <int>, FOLICACID_DII <int>, GARLIC_DII <int>, GINGER_DII <int>,
#> #   IRON_DII <int>, MG_DII <int>, MUFA_DII <int>, NIACIN_DII <int>,
#> #   N3FAT_DII <int>, N6FAT_DII <int>, ONION_DII <int>, PROTEIN_DII <int>,
#> #   PUFA_DII <int>, RIBOFLAVIN_DII <int>, SAFFRON_DII <int>, …